The rectangle in the 00 (blank) state is blocking the content buttons underneath. Make it smaller so it doesn't cover the buttons.
Also, make sure 00 is the selected state when you export, and everything should work as expected.
in5 creates a fairly literal translation of the document (including the stacking order and current state of everything), whereas a Folio is a screeshot with Folios added on top. That's why the Content Viewer worked differently than the in5 output in this case.