The rectangle in the 00 (blank) state is blocking the content buttons underneath. Make it smaller so it doesn't cover the buttons.
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Also, make sure 00 is the selected state when you export, and everything should work as expected.
in5 creates a fairly literal translation of the document (including the stacking order and current state of everything), whereas a Folio is a screeshot with Folios added on top. That's why the Content Viewer worked differently than the in5 output in this case.