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Or Have I to convert them in one only doc?

Any recommendations about how to work with bigs docs?
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You could either convert the multiple docs into one doc with the MergeFiles script or make a main document, export the other documents separately, and link from the main document to the individual ones.

Here's an article with Tips & Best Practices for Exporting Long-from Digital Documents from InDesign with in5 (and speeding up load time).

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