I figured it out, first off I did not add any code within the in5 export window. I exported normally and did not edit the code it exported. I used the method presented on http://detectmobilebrowsers.mobi I added their mobile_device_detect.php file on the same level as the index.html along with a second php file with the following code in it
<?php
require_once('mobile_device_detect.php');
$mobile = mobile_device_detect();
// redirect all mobiles to mobile site and all other browsers to desktop site
if($mobile==true){
}else{
}
exit;
?>
So now when a user has the desktop link and is viewing it from a mobile device it will automatically redirect them to web app build. If someone has the web app link and tries to view it from a desktop it automatically redirects them to the regular web build.
Any questions let me know